STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEN01248.1Hypothetical protein. (324 aa)    
Predicted Functional Partners:
SEN01231.1
Type VI secretion, VasB, ImpH, VC_A0111.
 
     0.949
SEN01144.1
NlpC/P60 family protein.
 
     0.885
SEN01126.1
PKD domain-containing protein.
 
     0.849
SEN01285.1
Hypothetical protein.
 
     0.849
SEN01297.1
Hypothetical protein.
 
     0.838
SEN01363.1
Gene 25-like lysozyme.
 
     0.829
SEN01392.1
Hypothetical protein.
 
     0.821
SEN01428.1
Hypothetical protein.
 
   
 0.818
SEN01402.1
Hypothetical protein.
 
     0.810
SEM43435.1
Hypothetical protein.
 
   
 0.790
Your Current Organism:
Chryseobacterium taichungense
NCBI taxonomy Id: 295069
Other names: C. taichungense, CCUG 50001, CIP 108519, Chryseobacterium taichungense Shen et al. 2005, DSM 17453, strain CC-TWGS1-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.