Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SEM08701.1 | SEM14441.1 | SAMN05421856_10122 | SAMN05421856_101370 | Hypothetical protein; Belongs to the cytochrome P450 family. | ATP-dependent DNA helicase RecQ. | 0.401 |
SEM08701.1 | SEM81987.1 | SAMN05421856_10122 | SAMN05421856_10712 | Hypothetical protein; Belongs to the cytochrome P450 family. | HRDC domain-containing protein. | 0.401 |
SEM08701.1 | SEM88926.1 | SAMN05421856_10122 | SAMN05421856_10812 | Hypothetical protein; Belongs to the cytochrome P450 family. | ATP-dependent DNA helicase RecQ. | 0.401 |
SEM08701.1 | SEN04400.1 | SAMN05421856_10122 | SAMN05421856_11278 | Hypothetical protein; Belongs to the cytochrome P450 family. | Predicted phosphoesterase. | 0.813 |
SEM08701.1 | SEN09237.1 | SAMN05421856_10122 | SAMN05421856_11520 | Hypothetical protein; Belongs to the cytochrome P450 family. | Exonuclease SbcC. | 0.880 |
SEM08701.1 | polA | SAMN05421856_10122 | SAMN05421856_103464 | Hypothetical protein; Belongs to the cytochrome P450 family. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.953 |
SEM08701.1 | recA | SAMN05421856_10122 | SAMN05421856_101474 | Hypothetical protein; Belongs to the cytochrome P450 family. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.473 |
SEM08701.1 | sbcD | SAMN05421856_10122 | SAMN05421856_11519 | Hypothetical protein; Belongs to the cytochrome P450 family. | Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.813 |
SEM14441.1 | SEM08701.1 | SAMN05421856_101370 | SAMN05421856_10122 | ATP-dependent DNA helicase RecQ. | Hypothetical protein; Belongs to the cytochrome P450 family. | 0.401 |
SEM14441.1 | SEM88926.1 | SAMN05421856_101370 | SAMN05421856_10812 | ATP-dependent DNA helicase RecQ. | ATP-dependent DNA helicase RecQ. | 0.928 |
SEM14441.1 | SEN04400.1 | SAMN05421856_101370 | SAMN05421856_11278 | ATP-dependent DNA helicase RecQ. | Predicted phosphoesterase. | 0.854 |
SEM14441.1 | SEN09237.1 | SAMN05421856_101370 | SAMN05421856_11520 | ATP-dependent DNA helicase RecQ. | Exonuclease SbcC. | 0.883 |
SEM14441.1 | polA | SAMN05421856_101370 | SAMN05421856_103464 | ATP-dependent DNA helicase RecQ. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.970 |
SEM14441.1 | recA | SAMN05421856_101370 | SAMN05421856_101474 | ATP-dependent DNA helicase RecQ. | Recombination protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.909 |
SEM14441.1 | sbcD | SAMN05421856_101370 | SAMN05421856_11519 | ATP-dependent DNA helicase RecQ. | Exonuclease SbcD; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.854 |
SEM14441.1 | topA | SAMN05421856_101370 | SAMN05421856_106289 | ATP-dependent DNA helicase RecQ. | DNA topoisomerase-1; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.900 |
SEM40895.1 | SEN09237.1 | SAMN05421856_10354 | SAMN05421856_11520 | ATPase family associated with various cellular activities (AAA). | Exonuclease SbcC. | 0.829 |
SEM81987.1 | SEM08701.1 | SAMN05421856_10712 | SAMN05421856_10122 | HRDC domain-containing protein. | Hypothetical protein; Belongs to the cytochrome P450 family. | 0.401 |
SEM81987.1 | SEN04400.1 | SAMN05421856_10712 | SAMN05421856_11278 | HRDC domain-containing protein. | Predicted phosphoesterase. | 0.854 |
SEM81987.1 | SEN09237.1 | SAMN05421856_10712 | SAMN05421856_11520 | HRDC domain-containing protein. | Exonuclease SbcC. | 0.883 |
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