STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG22499.1Undecaprenyl-phosphate mannosyltransferase. (264 aa)    
Predicted Functional Partners:
rfbE_2
CDP-paratose 2-epimerase.
 
 
  0.962
rfbE_1
CDP-paratose 2-epimerase.
 
 
  0.923
KRG22025.1
D-glycero-beta-D-manno-heptose-1,7-bisphosphate 7-phosphatase.
 
  
  0.663
fmt
Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
 
  0.565
rebM_1
Demethylrebeccamycin-D-glucose O-methyltransferase.
       0.536
KRG22496.1
Hypothetical protein.
       0.536
KRG20325.1
Undecaprenyl-phosphate mannosyltransferase.
  
  
 
0.453
KRG22561.1
PhoD-like phosphatase.
  
     0.446
naiP
Putative niacin/nicotinamide transporter NaiP.
  
     0.428
csbB
Putative glycosyltransferase CsbB.
  
  
 
0.424
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.