STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
apxIB_1Toxin RTX-I translocation ATP-binding protein. (770 aa)    
Predicted Functional Partners:
prsE_1
Type I secretion system membrane fusion protein PrsE.
 0.990
prsE_3
Type I secretion system membrane fusion protein PrsE.
 0.957
prsE_2
Type I secretion system membrane fusion protein PrsE.
 0.955
cvaA
Colicin V secretion protein CvaA.
 0.937
bepC
Outer membrane efflux protein BepC precursor.
 
 
 0.916
KRG21305.1
Hypothetical protein.
 
 
 0.872
KRG22539.1
Hypothetical protein.
 
   
 0.841
degU
Transcriptional regulatory protein DegU.
 
    0.816
KRG22828.1
Hypothetical protein.
 
 
 0.786
KRG18907.1
Hypothetical protein.
 
   
 0.780
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.