STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG22539.1Hypothetical protein. (218 aa)    
Predicted Functional Partners:
csrD
RNase E specificity factor CsrD.
 
 
 
 0.977
bepC
Outer membrane efflux protein BepC precursor.
 
   
 0.906
apxIB_1
Toxin RTX-I translocation ATP-binding protein.
 
   
 0.841
prsE_1
Type I secretion system membrane fusion protein PrsE.
 
     0.829
prsE_2
Type I secretion system membrane fusion protein PrsE.
 
     0.763
prsE_3
Type I secretion system membrane fusion protein PrsE.
 
     0.763
KRG21305.1
Hypothetical protein.
 
     0.736
KRG21794.1
Von Willebrand factor type A domain protein.
  
     0.554
sauU_1
Putative sulfoacetate transporter SauU.
       0.541
KRG22827.1
Hypothetical protein.
  
     0.534
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.