STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
naiPPutative niacin/nicotinamide transporter NaiP. (404 aa)    
Predicted Functional Partners:
proP_2
Proline/betaine transporter.
  
     0.683
proP_3
Proline/betaine transporter.
  
     0.682
gltX
Glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.540
KRG21678.1
Hypothetical protein.
  
     0.536
rhtB
Homoserine/homoserine lactone efflux protein.
       0.518
KRG22545.1
Putative metal-dependent hydrolase.
       0.515
KRG22546.1
PAP2 superfamily protein.
       0.515
rfbE_2
CDP-paratose 2-epimerase.
  
     0.466
rfbE_1
CDP-paratose 2-epimerase.
  
     0.444
KRG22499.1
Undecaprenyl-phosphate mannosyltransferase.
  
     0.428
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.