STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjcC_1Putative membrane protein YjcC. (435 aa)    
Predicted Functional Partners:
dosC
Diguanylate cyclase DosC.
 
     0.976
cph2_1
Phytochrome-like protein cph2.
 
     0.958
KRG22659.1
Sensory histidine kinase AtoS.
 
      0.899
livJ_1
Leu/Ile/Val-binding protein precursor.
       0.714
pleD
Response regulator PleD.
 
     0.591
luxQ
Autoinducer 2 sensor kinase/phosphatase LuxQ.
 
     0.584
rpfG_1
Cyclic di-GMP phosphodiesterase response regulator RpfG.
  
     0.558
pleC
Non-motile and phage-resistance protein.
 
     0.467
barA_1
Signal transduction histidine-protein kinase BarA.
 
     0.462
rpfG_2
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
     0.418
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.