STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pglFUDP-N-acetyl-alpha-D-glucosamine C6 dehydratase. (631 aa)    
Predicted Functional Partners:
epsN_2
Putative pyridoxal phosphate-dependent aminotransferase EpsN; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.938
manC1_1
Mannose-1-phosphate guanylyltransferase 1; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
 
 0.936
gtaB_1
UTP--glucose-1-phosphate uridylyltransferase.
    
 0.882
epsN_1
Putative pyridoxal phosphate-dependent aminotransferase EpsN; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.822
wbpE
UDP-2-acetamido-2-deoxy-3-oxo-D-glucuronate aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
 0.818
idhA
Inositol 2-dehydrogenase.
  
 
 0.726
flgK
Flagellar hook-associated protein 1; Belongs to the flagella basal body rod proteins family.
  
    0.717
tagO
Putative undecaprenyl-phosphate N-acetylglucosaminyl 1-phosphate transferase.
 
  
 0.697
rmlD
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
 
 0.648
flgI
Flagellar P-ring protein precursor; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
   
  
 0.639
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.