STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rsbUPhosphoserine phosphatase RsbU. (400 aa)    
Predicted Functional Partners:
btrV
Putative anti-sigma factor antagonist BtrV; Belongs to the anti-sigma-factor antagonist family.
 
 0.996
fliM
Flagellar motor switch protein FliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
 0.994
frzE
Gliding motility regulatory protein.
  
 0.993
tcrA
Transcriptional regulatory protein TcrA.
 
 0.991
btrW
Serine/threonine-protein kinase BtrW.
 0.985
KRG18465.1
Putative diguanylate cyclase.
 
 0.985
barA_2
Signal transduction histidine-protein kinase BarA.
 0.983
KRG22659.1
Sensory histidine kinase AtoS.
 
 0.976
cheA
Chemotaxis protein CheA.
  
 0.973
KRG21152.1
Chemotaxis protein CheY.
 0.971
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.