Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ripAHTH-type transcriptional repressor of iron proteins A. (247 aa)    
Predicted Functional Partners:
korA
2-oxoglutarate oxidoreductase subunit KorA.
     
 0.743
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
     
  0.742
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.709
cyaA
Adenylate cyclase 1.
     
  0.645
KRG22658.1
Hypothetical protein.
       0.547
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
    
  0.446
pyrB
Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family.
     
  0.439
prkC_2
Serine/threonine-protein kinase PrkC.
   
 0.437
allS
HTH-type transcriptional activator AllS; Belongs to the LysR transcriptional regulatory family.
  
  
 0.429
KRG18465.1
Putative diguanylate cyclase.
      
 0.402
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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