STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG22667.1Hypothetical protein. (2244 aa)    
Predicted Functional Partners:
KRG21620.1
Primosome assembly protein PriA.
  
     0.775
KRG22514.1
Type III restriction enzyme, res subunit.
  
     0.774
KRG17643.1
Type III restriction enzyme, res subunit.
  
     0.774
KRG21085.1
Ankyrin repeats (3 copies).
  
     0.773
KRG20522.1
Protein kinase domain protein.
  
     0.771
KRG21292.1
Tubulin-tyrosine ligase family protein.
  
     0.757
dprE1
Putative decaprenylphosphoryl-beta-D-ribose oxidase.
  
     0.739
tcaR
HTH-type transcriptional regulator TcaR.
 
    0.688
KRG21305.1
Hypothetical protein.
  
 
 0.660
KRG21298.1
Histone methylation protein DOT1.
  
     0.654
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.