STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phbC_1Poly-beta-hydroxybutyrate polymerase. (579 aa)    
Predicted Functional Partners:
pta
Phosphate acetyltransferase.
 
 0.926
KRG21082.1
Hypothetical protein; PHB de-polymerase C-terminus.
 
  
 0.862
fadJ
Fatty acid oxidation complex subunit alpha; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.813
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
     
 0.813
KRG20609.1
PHB/PHA accumulation regulator DNA-binding domain protein.
 
   
 0.797
phbB
Acetoacetyl-CoA reductase.
  
 
  0.781
KRG22774.1
Hypothetical protein; DNA replication terminus site-binding protein (Ter protein).
 
     0.616
KRG21840.1
Patatin-like phospholipase.
  
     0.576
cph2_1
Phytochrome-like protein cph2.
       0.554
KRG21662.1
Patatin-like phospholipase.
  
     0.553
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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