STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG22871.1PilZ domain protein. (126 aa)    
Predicted Functional Partners:
csrD
RNase E specificity factor CsrD.
    
   0.966
divK_2
Polar-differentiation response regulator DivK.
    
  0.966
cph2_4
Phytochrome-like protein cph2.
    
  0.966
epsE_2
Type II secretion system protein E.
  
 
 
 0.849
epsE_1
Type II secretion system protein E.
    
 
 0.826
dosC
Diguanylate cyclase DosC.
    
   0.823
holB
DNA polymerase III subunit delta'.
     
 0.823
KRG21017.1
Competence protein A.
  
   
 0.820
KRG21014.1
Pilus assembly protein, PilP.
  
   
 0.805
KRG21015.1
Pilus assembly protein, PilO.
  
   
 0.803
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.