Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KRG22067.1 | dam | HT99x_00484 | HT99x_00482 | Hypothetical protein. | DNA adenine methylase. | 0.557 |
KRG22067.1 | yqjG | HT99x_00484 | HT99x_00483 | Hypothetical protein. | Glutathionyl-hydroquinone reductase YqjG. | 0.557 |
dam | KRG22067.1 | HT99x_00482 | HT99x_00484 | DNA adenine methylase. | Hypothetical protein. | 0.557 |
dam | mutH | HT99x_00482 | HT99x_00701 | DNA adenine methylase. | DNA mismatch repair protein MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family. | 0.763 |
dam | rpe | HT99x_00482 | HT99x_01843 | DNA adenine methylase. | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | 0.477 |
dam | trpS | HT99x_00482 | HT99x_00136 | DNA adenine methylase. | Tryptophan--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.439 |
dam | yqjG | HT99x_00482 | HT99x_00483 | DNA adenine methylase. | Glutathionyl-hydroquinone reductase YqjG. | 0.773 |
mutH | dam | HT99x_00701 | HT99x_00482 | DNA mismatch repair protein MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences. It is involved in DNA mismatch repair. Belongs to the MutH family. | DNA adenine methylase. | 0.763 |
rpe | dam | HT99x_01843 | HT99x_00482 | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | DNA adenine methylase. | 0.477 |
rpe | trpS | HT99x_01843 | HT99x_00136 | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | Tryptophan--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.452 |
trpS | dam | HT99x_00136 | HT99x_00482 | Tryptophan--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | DNA adenine methylase. | 0.439 |
trpS | rpe | HT99x_00136 | HT99x_01843 | Tryptophan--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family. | Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | 0.452 |
yqjG | KRG22067.1 | HT99x_00483 | HT99x_00484 | Glutathionyl-hydroquinone reductase YqjG. | Hypothetical protein. | 0.557 |
yqjG | dam | HT99x_00483 | HT99x_00482 | Glutathionyl-hydroquinone reductase YqjG. | DNA adenine methylase. | 0.773 |