Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yehTTranscriptional regulatory protein YehT. (245 aa)    
Predicted Functional Partners:
ypdA
Sensor histidine kinase YpdA.
 
 0.991
tcrA
Transcriptional regulatory protein TcrA.
 
  
 0.902
barA_2
Signal transduction histidine-protein kinase BarA.
 
  
 0.865
KRG18465.1
Putative diguanylate cyclase.
    
 0.865
zraS_3
Sensor protein ZraS.
 
  
 0.837
KRG22659.1
Sensory histidine kinase AtoS.
    
 0.806
barA_1
Signal transduction histidine-protein kinase BarA.
    
 0.802
zraS_5
Sensor protein ZraS.
 
  
 0.792
zraS_4
Sensor protein ZraS.
  
  
  0.753
KRG22202.1
CheW-like domain protein.
  
  
 0.719
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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