STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG22123.1Competence protein A. (305 aa)    
Predicted Functional Partners:
KRG22124.1
Hypothetical protein.
  
 0.969
KRG22125.1
Hypothetical protein.
 
     0.958
epsE_1
Type II secretion system protein E.
 
 
 
 0.900
epsF_1
Type II secretion system protein F.
 
 
 
 0.897
KRG21016.1
Fimbrial assembly protein (PilN).
 
 0.888
pilE1
Fimbrial protein precursor.
 
     0.877
xcpT
Type II secretion system protein G precursor.
 
     0.833
KRG21010.1
Hypothetical protein.
 
    0.664
KRG21015.1
Pilus assembly protein, PilO.
 
 
 0.608
pilQ
Type IV pilus biogenesis and competence protein PilQ precursor.
  
 
 0.587
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.