STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG22124.1Hypothetical protein. (197 aa)    
Predicted Functional Partners:
KRG22123.1
Competence protein A.
  
 0.979
epsE_1
Type II secretion system protein E.
   
 
 0.935
KRG21015.1
Pilus assembly protein, PilO.
  
 
 0.913
KRG21014.1
Pilus assembly protein, PilP.
  
 
 0.912
KRG21017.1
Competence protein A.
  
 0.911
pilQ
Type IV pilus biogenesis and competence protein PilQ precursor.
  
 
 0.890
epsF_1
Type II secretion system protein F.
   
 
 0.884
KRG22125.1
Hypothetical protein.
       0.786
epsE_2
Type II secretion system protein E.
   
 
 0.727
KRG22017.1
LysM domain/BON superfamily protein.
    
   0.611
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.