Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRG22124.1Hypothetical protein. (197 aa)    
Predicted Functional Partners:
KRG22123.1
Competence protein A.
  
 0.969
epsE_1
Type II secretion system protein E.
   
 
 0.897
KRG21015.1
Pilus assembly protein, PilO.
  
 
 0.874
KRG21017.1
Competence protein A.
  
 0.872
pilQ
Type IV pilus biogenesis and competence protein PilQ precursor.
  
 
 0.858
epsF_1
Type II secretion system protein F.
   
 
 0.852
KRG22125.1
Hypothetical protein.
       0.784
KRG21014.1
Pilus assembly protein, PilP.
  
  
 0.779
xcpT
Type II secretion system protein G precursor.
  
    0.585
epsE_2
Type II secretion system protein E.
   
 
 0.568
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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