STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fabG_33-oxoacyl-[acyl-carrier-protein] reductase FabG; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (249 aa)    
Predicted Functional Partners:
KRG20878.1
Long-chain-fatty-acid--AMP ligase FadD29.
  
 0.842
ascD
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.
   
 0.807
pta
Phosphate acetyltransferase.
  
 0.796
thlA_1
Acetyl-CoA acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
 
  0.777
KRG22404.1
Methylmalonyl-CoA carboxyltransferase 12S subunit.
 
  0.776
fadH
2,4-dienoyl-CoA reductase [NADPH].
 
  
 0.752
fadJ
Fatty acid oxidation complex subunit alpha; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.739
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
  
 0.739
yngG
Hydroxymethylglutaryl-CoA lyase YngG.
 
 
  0.728
echA8
Putative enoyl-CoA hydratase echA8.
   
  0.715
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.