STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livJ_2Leu/Ile/Val-binding protein precursor. (369 aa)    
Predicted Functional Partners:
KRG22415.1
HAD superfamily, subfamily IIIB (Acid phosphatase).
       0.664
yhdY
Inner membrane amino-acid ABC transporter permease protein YhdY.
  
 
 0.629
aapJ
General L-amino acid-binding periplasmic protein AapJ precursor.
  
 
 0.593
glnQ_2
Glutamine transport ATP-binding protein GlnQ.
  
 
 0.582
artQ
Arginine transport system permease protein ArtQ.
    
 0.560
amiC_1
Aliphatic amidase expression-regulating protein.
  
 
0.560
KRG22416.1
Hypothetical protein.
       0.542
drrA_1
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
  
 
  0.538
artP
Arginine-binding extracellular protein ArtP precursor; Belongs to the bacterial solute-binding protein 3 family.
   
 
 0.506
gatA
Glutamyl-tRNA(Gln) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
  
 
  0.497
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.