STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhRInner membrane transport permease YbhR. (370 aa)    
Predicted Functional Partners:
ybhF_1
Putative ABC transporter ATP-binding protein YbhF.
 
  0.997
emrA_1
Multidrug export protein EmrA.
  
 0.984
ybhF_2
Putative ABC transporter ATP-binding protein YbhF.
 
  0.959
drrA_1
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
 
  0.951
drrA_2
Doxorubicin resistance ATP-binding protein DrrA.
 
 
  0.951
yxlF
Putative ABC transporter ATP-binding protein YxlF.
 
 
 
  0.944
lptB
Lipopolysaccharide export system ATP-binding protein LptB.
 
   
  0.931
ybhS
Inner membrane transport permease YbhS.
 
  
 
0.883
metN
Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
      0.835
KRG20612.1
Nitroreductase A.
  
    0.591
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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