STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG22449.1Hypothetical protein. (318 aa)    
Predicted Functional Partners:
ctpB
Carboxy-terminal processing protease CtpB precursor; Belongs to the peptidase S41A family.
    
 0.718
KRG21437.1
Hypothetical protein.
  
  0.659
ankX_4
Phosphocholine transferase AnkX.
   
  0.579
ankX_5
Phosphocholine transferase AnkX.
   
  0.579
ankX_9
Phosphocholine transferase AnkX.
   
  0.579
KRG20615.1
Ankyrin repeats (3 copies).
   
  0.579
KRG19439.1
Ankyrin repeats (3 copies).
   
  0.579
pta
Phosphate acetyltransferase.
    
  0.549
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
    
  0.517
KRG22448.1
Hypothetical protein.
       0.517
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.