Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KRG21768.1Ankyrin repeats (3 copies). (2799 aa)    
Predicted Functional Partners:
KRG21767.1
Hypothetical protein.
       0.773
KRG20615.1
Ankyrin repeats (3 copies).
  
 
   0.772
KRG22009.1
Ankyrin repeats (3 copies).
  
     0.771
KRG19439.1
Ankyrin repeats (3 copies).
  
 
   0.771
KRG21928.1
Ankyrin repeats (3 copies).
  
     0.770
KRG20953.1
Ankyrin repeats (3 copies).
  
     0.769
KRG20763.1
Ankyrin repeats (3 copies).
  
     0.768
KRG20495.1
Ankyrin repeats (3 copies).
  
     0.768
KRG21882.1
Ankyrin repeats (3 copies).
  
     0.767
KRG22705.1
Ankyrin repeats (3 copies).
  
     0.766
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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