STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rebM_2Demethylrebeccamycin-D-glucose O-methyltransferase. (271 aa)    
Predicted Functional Partners:
KRG21776.1
Serine/threonine protein kinase.
       0.773
KRG20878.1
Long-chain-fatty-acid--AMP ligase FadD29.
    
 0.752
KRG21778.1
Hypothetical protein.
       0.645
KRG20794.1
Epi-isozizaene 5-monooxygenase/(E)-beta-farnesene synthase; Belongs to the cytochrome P450 family.
    
  0.627
aas
Bifunctional protein Aas.
     
 0.497
nucM
Nuclease NucM precursor.
       0.486
pcpB
Pentachlorophenol 4-monooxygenase.
  
  
  0.480
KRG21779.1
Hypothetical protein.
       0.472
ubiE_2
Demethylmenaquinone methyltransferase.
  
 
 
0.463
bioB
Biotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family.
  
 
 0.429
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.