STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prnD_2Aminopyrrolnitrin oxygenase PrnD. (349 aa)    
Predicted Functional Partners:
KRG21990.1
Hypothetical protein.
 
     0.911
dan
D-aminoacylase.
 
     0.907
ascD
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.
  
 
 0.875
KRG21997.1
Hypothetical protein.
 
 
 0.789
fadH
2,4-dienoyl-CoA reductase [NADPH].
    
  0.789
KRG21989.1
PAP2 superfamily protein.
       0.777
KRG21987.1
Hypothetical protein.
       0.773
fabG_4
3-oxoacyl-[acyl-carrier-protein] reductase FabG; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.773
KRG21993.1
Hypothetical protein.
       0.773
prnD_1
Aminopyrrolnitrin oxygenase PrnD.
 
  
 
0.758
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.