STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ankX_5Phosphocholine transferase AnkX. (538 aa)    
Predicted Functional Partners:
KRG20878.1
Long-chain-fatty-acid--AMP ligase FadD29.
   
 0.881
KRG20615.1
Ankyrin repeats (3 copies).
 
 
   0.801
KRG20843.1
Ankyrin repeats (3 copies).
 
 
   0.796
KRG22829.1
Leucine Rich repeats (2 copies).
 
 
 0.781
KRG20753.1
Ankyrin repeats (3 copies).
  
 
   0.776
yopM
Outer membrane protein YopM.
 
 
 0.775
KRG20724.1
Ankyrin repeats (3 copies).
  
 
   0.775
KRG22799.1
Ankyrin repeats (3 copies).
  
 
   0.773
KRG22224.1
Ankyrin repeats (3 copies).
  
 
   0.773
KRG20763.1
Ankyrin repeats (3 copies).
  
 
   0.772
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.