STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fhlAFormate hydrogenlyase transcriptional activator. (336 aa)    
Predicted Functional Partners:
frzE
Gliding motility regulatory protein.
  
 0.928
KRG18465.1
Putative diguanylate cyclase.
  
 0.911
tcrA
Transcriptional regulatory protein TcrA.
  
 0.900
KRG22659.1
Sensory histidine kinase AtoS.
  
 0.897
flgK
Flagellar hook-associated protein 1; Belongs to the flagella basal body rod proteins family.
  
  
 0.895
barA_2
Signal transduction histidine-protein kinase BarA.
  
 0.884
barA_1
Signal transduction histidine-protein kinase BarA.
  
 0.876
rpoN
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
  
 0.873
divK_2
Polar-differentiation response regulator DivK.
  
 0.869
cph2_4
Phytochrome-like protein cph2.
  
 0.869
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.