STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
traC_2DNA primase TraC. (296 aa)    
Predicted Functional Partners:
KRG21537.1
Hypothetical protein.
     0.990
KRG21535.1
Prophage CP4-57 regulatory protein (AlpA).
 
     0.867
intA
Prophage CP4-57 integrase; Belongs to the 'phage' integrase family.
 
     0.611
intS
Putative prophage CPS-53 integrase; Belongs to the 'phage' integrase family.
 
     0.602
KRG21869.1
Prophage CP4-57 regulatory protein (AlpA).
 
     0.475
KRG21534.1
Hypothetical protein.
       0.458
KRG21538.1
YcfA-like protein.
       0.425
hicB
Antitoxin HicB.
       0.425
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.