STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG21563.1Hypothetical protein. (602 aa)    
Predicted Functional Partners:
KRG21562.1
Hypothetical protein.
       0.773
KRG18043.1
Hypothetical protein.
  
     0.734
KRG21437.1
Hypothetical protein.
  
     0.707
KRG21438.1
Hypothetical protein.
  
     0.635
KRG20429.1
Cell division protein DedD.
  
     0.543
KRG21929.1
RhoGEF domain protein.
  
     0.521
KRG21564.1
Hypothetical protein.
       0.483
KRG22431.1
Ankyrin repeats (3 copies).
  
     0.480
KRG21565.1
Hypothetical protein.
       0.471
tam_2
Trans-aconitate 2-methyltransferase.
  
     0.471
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.