STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG21642.1Isoprenylcysteine carboxyl methyltransferase (ICMT) family protein. (419 aa)    
Predicted Functional Partners:
KRG22829.1
Leucine Rich repeats (2 copies).
    
 0.676
yopM
Outer membrane protein YopM.
    
 0.676
KRG20794.1
Epi-isozizaene 5-monooxygenase/(E)-beta-farnesene synthase; Belongs to the cytochrome P450 family.
    
  0.612
yjjG
Pyrimidine 5'-nucleotidase YjjG.
   
 
  0.598
nudC
NADH pyrophosphatase.
    
 0.585
ribF
Riboflavin biosynthesis protein RibF; Belongs to the ribF family.
     
 0.581
atsA_1
Arylsulfatase.
       0.518
moeZ
Putative adenylyltransferase/sulfurtransferase MoeZ.
    
 0.464
glpE
Thiosulfate sulfurtransferase GlpE.
    
 0.431
rpsM
30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.
   
    0.400
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.