STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ubiE_3Demethylmenaquinone methyltransferase. (263 aa)    
Predicted Functional Partners:
KRG20878.1
Long-chain-fatty-acid--AMP ligase FadD29.
    
 0.752
KRG21687.1
Hypothetical protein.
       0.689
KRG20794.1
Epi-isozizaene 5-monooxygenase/(E)-beta-farnesene synthase; Belongs to the cytochrome P450 family.
    
  0.627
ubiE_2
Demethylmenaquinone methyltransferase.
  
 
  0.590
KRG21689.1
Heat shock protein HtpX.
       0.551
qorB
Quinone oxidoreductase 2.
  
  
  0.526
coq7
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
   
 
 0.521
ubiH
2-octaprenyl-6-methoxyphenol hydroxylase.
     
 0.500
ubiI
2-octaprenylphenol hydroxylase.
     
 0.500
aas
Bifunctional protein Aas.
     
 0.497
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.