STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG21694.1Hypothetical protein. (669 aa)    
Predicted Functional Partners:
rpoE
ECF RNA polymerase sigma-E factor; Belongs to the sigma-70 factor family. ECF subfamily.
    
   0.792
KRG18465.1
Putative diguanylate cyclase.
     
 0.694
KRG21695.1
Putative peptidase.
       0.682
KRG21609.1
Hypothetical protein.
  
 
   0.574
KRG22648.1
Hypothetical protein.
  
 
   0.562
KRG21574.1
Hypothetical protein.
  
 
   0.559
KRG21853.1
Hypothetical protein.
  
     0.549
KRG20540.1
Hypothetical protein.
  
 
   0.516
adc
Putative acetoacetate decarboxylase.
  
     0.448
KRG22828.1
Hypothetical protein.
    
   0.445
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.