STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsaAPutative peroxiredoxin. (201 aa)    
Predicted Functional Partners:
trxB
Thioredoxin reductase.
  
 
 0.973
ykuV
Thiol-disulfide oxidoreductase YkuV.
  
 0.962
dsbE
Thiol:disulfide interchange protein DsbE.
  
 0.939
KRG20275.1
Hypothetical protein.
  
 0.939
KRG19160.1
Hypothetical protein.
  
 0.939
trxA
Thioredoxin-1; Belongs to the thioredoxin family.
  
 
 0.823
fur
Ferric uptake regulation protein; Belongs to the Fur family.
  
  
 0.761
lpdA
Dihydrolipoyl dehydrogenase.
   
 0.757
katA_1
Catalase.
   
 
 0.745
katA_2
Catalase.
   
 
 0.745
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.