STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tcaRHTH-type transcriptional regulator TcaR. (145 aa)    
Predicted Functional Partners:
KRG17643.1
Type III restriction enzyme, res subunit.
  
  
  0.731
KRG22514.1
Type III restriction enzyme, res subunit.
  
  
  0.718
KRG21620.1
Primosome assembly protein PriA.
  
  
  0.718
KRG22667.1
Hypothetical protein.
 
    0.688
dprE1
Putative decaprenylphosphoryl-beta-D-ribose oxidase.
  
  
  0.631
KRG20522.1
Protein kinase domain protein.
  
     0.597
qorB
Quinone oxidoreductase 2.
       0.559
KRG21085.1
Ankyrin repeats (3 copies).
  
  
  0.549
KRG21792.1
Hypothetical protein.
  
     0.539
KRG21382.1
Hypothetical protein.
       0.491
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.