STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG21425.1Hypothetical protein. (107 aa)    
Predicted Functional Partners:
KRG21424.1
Hypothetical protein.
 
     0.808
KRG21278.1
Glutamate-cysteine ligase.
  
     0.753
KRG20912.1
Zinc-finger domain protein.
  
     0.727
KRG21194.1
Hypothetical protein.
  
     0.665
KRG21391.1
Hypothetical protein.
  
     0.648
KRG21193.1
Hypothetical protein.
  
     0.625
pcs
Phosphatidylcholine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.576
KRG21427.1
Hypothetical protein.
       0.550
sdhC
Succinate dehydrogenase cytochrome b556 subunit.
  
     0.547
KRG21197.1
AAA-like domain protein.
  
     0.541
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.