STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG21196.1RNase III inhibitor. (2428 aa)    
Predicted Functional Partners:
KRG21929.1
RhoGEF domain protein.
  
     0.645
KRG18043.1
Hypothetical protein.
  
     0.616
KRG22473.1
RasGEF domain protein.
  
     0.583
KRG22710.1
Leucine Rich repeats (2 copies).
  
     0.555
KRG21195.1
Hypothetical protein.
       0.538
KRG20657.1
Hypothetical protein.
  
     0.538
KRG20493.1
Ankyrin repeats (3 copies).
  
     0.538
KRG21197.1
AAA-like domain protein.
       0.516
KRG21437.1
Hypothetical protein.
  
     0.510
KRG20615.1
Ankyrin repeats (3 copies).
  
     0.495
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.