STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG21208.1Hypothetical protein. (284 aa)    
Predicted Functional Partners:
KRG21207.1
Bacterial conjugation TrbI-like protein.
   
 
 0.995
KRG21206.1
Hypothetical protein.
   
 
 0.970
KRG21201.1
Hypothetical protein.
    
 
 0.857
KRG21200.1
Hypothetical protein.
    
 
 0.856
KRG21205.1
Macrophage killing protein with similarity to conjugation protein.
       0.700
amiC_2
N-acetylmuramoyl-L-alanine amidase AmiC precursor.
    
 
 0.577
mltD
Membrane-bound lytic murein transglycosylase D precursor.
    
 
 0.577
pal_1
Peptidoglycan-associated lipoprotein precursor; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
   
   0.564
psaB
Photosystem I P700 chlorophyll a apoprotein A2.
   
   0.564
pal_2
Outer membrane protein P6 precursor.
   
   0.564
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.