STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acdA_2Acyl-CoA dehydrogenase. (386 aa)    
Predicted Functional Partners:
fadJ
Fatty acid oxidation complex subunit alpha; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
 0.993
etfA
Electron transfer flavoprotein subunit alpha.
 0.993
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
 
 0.992
pdhB_2
Pyruvate dehydrogenase E1 component subunit beta.
  
 0.956
etfB
Electron transfer flavoprotein subunit beta.
 
 0.939
KRG20878.1
Long-chain-fatty-acid--AMP ligase FadD29.
 
 
 0.926
pta
Phosphate acetyltransferase.
  
 0.897
korA
2-oxoglutarate oxidoreductase subunit KorA.
  
 
 0.826
echA8
Putative enoyl-CoA hydratase echA8.
 
 0.796
aceF
Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2).
   
 0.780
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.