STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nemR_3HTH-type transcriptional repressor NemR. (188 aa)    
Predicted Functional Partners:
acuR
Transcriptional regulator AcuR.
  
     0.610
pdhB_2
Pyruvate dehydrogenase E1 component subunit beta.
 
  
  0.505
iolC
5-dehydro-2-deoxygluconokinase.
       0.495
pagL
Lipid A deacylase PagL precursor; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family.
       0.470
KRG18465.1
Putative diguanylate cyclase.
    
 
 0.451
tcrA
Transcriptional regulatory protein TcrA.
    
 
 0.439
prkC_2
Serine/threonine-protein kinase PrkC.
    
 
 0.429
KRG22659.1
Sensory histidine kinase AtoS.
    
 
 0.411
divK_2
Polar-differentiation response regulator DivK.
    
 
 0.406
cph2_4
Phytochrome-like protein cph2.
    
 
 0.406
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.