znuA protein (Berkiella aquae) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

znuA

High-affinity zinc uptake system protein ZnuA precursor. (317 aa)

Predicted Functional Partners:

znuC

0.993

znuB_1

0.981

psaA

0.743

znuB_2

0.711

mepM_1

0.692

zur

0.615

mepM_2

0.438

Your Current Organism:

Berkiella aquae

NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
mepM_1	znuA	HT99x_02368	HT99x_01895	Murein DD-endopeptidase MepM.	High-affinity zinc uptake system protein ZnuA precursor.	0.692
mepM_2	znuA	HT99x_02734	HT99x_01895	Murein DD-endopeptidase MepM.	High-affinity zinc uptake system protein ZnuA precursor.	0.438
psaA	znuA	HT99x_02922	HT99x_01895	Manganese ABC transporter substrate-binding lipoprotein precursor.	High-affinity zinc uptake system protein ZnuA precursor.	0.743
psaA	znuB_1	HT99x_02922	HT99x_01893	Manganese ABC transporter substrate-binding lipoprotein precursor.	High-affinity zinc uptake system membrane protein ZnuB.	0.964
psaA	znuB_2	HT99x_02922	HT99x_02923	Manganese ABC transporter substrate-binding lipoprotein precursor.	High-affinity zinc uptake system membrane protein ZnuB.	0.995
psaA	znuC	HT99x_02922	HT99x_01894	Manganese ABC transporter substrate-binding lipoprotein precursor.	Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.	0.984
psaA	zur	HT99x_02922	HT99x_02924	Manganese ABC transporter substrate-binding lipoprotein precursor.	Zinc uptake regulation protein; Belongs to the Fur family.	0.862
znuA	mepM_1	HT99x_01895	HT99x_02368	High-affinity zinc uptake system protein ZnuA precursor.	Murein DD-endopeptidase MepM.	0.692
znuA	mepM_2	HT99x_01895	HT99x_02734	High-affinity zinc uptake system protein ZnuA precursor.	Murein DD-endopeptidase MepM.	0.438
znuA	psaA	HT99x_01895	HT99x_02922	High-affinity zinc uptake system protein ZnuA precursor.	Manganese ABC transporter substrate-binding lipoprotein precursor.	0.743
znuA	znuB_1	HT99x_01895	HT99x_01893	High-affinity zinc uptake system protein ZnuA precursor.	High-affinity zinc uptake system membrane protein ZnuB.	0.981
znuA	znuB_2	HT99x_01895	HT99x_02923	High-affinity zinc uptake system protein ZnuA precursor.	High-affinity zinc uptake system membrane protein ZnuB.	0.711
znuA	znuC	HT99x_01895	HT99x_01894	High-affinity zinc uptake system protein ZnuA precursor.	Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.	0.993
znuA	zur	HT99x_01895	HT99x_02924	High-affinity zinc uptake system protein ZnuA precursor.	Zinc uptake regulation protein; Belongs to the Fur family.	0.615
znuB_1	psaA	HT99x_01893	HT99x_02922	High-affinity zinc uptake system membrane protein ZnuB.	Manganese ABC transporter substrate-binding lipoprotein precursor.	0.964
znuB_1	znuA	HT99x_01893	HT99x_01895	High-affinity zinc uptake system membrane protein ZnuB.	High-affinity zinc uptake system protein ZnuA precursor.	0.981
znuB_1	znuC	HT99x_01893	HT99x_01894	High-affinity zinc uptake system membrane protein ZnuB.	Zinc import ATP-binding protein ZnuC; Part of the ABC transporter complex ZnuABC involved in zinc import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Zinc importer (TC 3.A.1.15.5) family.	0.999
znuB_1	zur	HT99x_01893	HT99x_02924	High-affinity zinc uptake system membrane protein ZnuB.	Zinc uptake regulation protein; Belongs to the Fur family.	0.497
znuB_2	psaA	HT99x_02923	HT99x_02922	High-affinity zinc uptake system membrane protein ZnuB.	Manganese ABC transporter substrate-binding lipoprotein precursor.	0.995
znuB_2	znuA	HT99x_02923	HT99x_01895	High-affinity zinc uptake system membrane protein ZnuB.	High-affinity zinc uptake system protein ZnuA precursor.	0.711