STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG21000.1Fatty acid desaturase. (390 aa)    
Predicted Functional Partners:
KRG20912.1
Zinc-finger domain protein.
  
     0.669
KRG20878.1
Long-chain-fatty-acid--AMP ligase FadD29.
    
 0.581
coq7
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Catalyzes the hydroxylation of 2-nonaprenyl-3-methyl-6- methoxy-1,4-benzoquinol during ubiquinone biosynthesis.
  
     0.568
ascD
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.
  
  
 0.557
KRG21002.1
ABC-2 family transporter protein.
       0.548
KRG21003.1
ABC-type uncharacterized transport system.
       0.546
yxlF
Putative ABC transporter ATP-binding protein YxlF.
       0.543
KRG22069.1
Cytochrome c5.
  
     0.514
KRG22003.1
Acyltransferase.
  
  
  0.492
sdhC
Succinate dehydrogenase cytochrome b556 subunit.
  
     0.432
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.