STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG20794.1Epi-isozizaene 5-monooxygenase/(E)-beta-farnesene synthase; Belongs to the cytochrome P450 family. (511 aa)    
Predicted Functional Partners:
KRG20878.1
Long-chain-fatty-acid--AMP ligase FadD29.
  
 0.957
ascD
CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase.
 
 0.887
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.883
aas
Bifunctional protein Aas.
  
 0.847
KRG21822.1
Spermidine synthase.
     
  0.744
ubiI
2-octaprenylphenol hydroxylase.
  
 0.715
pcpB
Pentachlorophenol 4-monooxygenase.
  
 0.698
KRG21125.1
Hypothetical protein.
  
 
 0.697
ubiH
2-octaprenyl-6-methoxyphenol hydroxylase.
  
 0.674
KRG19714.1
6-hydroxynicotinate 3-monooxygenase precursor.
  
 0.672
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.