Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
KRG20799.1OsmC-like protein. (149 aa)    
Predicted Functional Partners:
yhhW_2
Quercetin 2,3-dioxygenase; Belongs to the pirin family.
  
    0.579
mrgA_2
Metalloregulation DNA-binding stress protein; Belongs to the Dps family.
       0.535
fadJ
Fatty acid oxidation complex subunit alpha; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
    
  0.534
fadN
Putative 3-hydroxyacyl-CoA dehydrogenase.
    
  0.534
yjjG
Pyrimidine 5'-nucleotidase YjjG.
     
  0.517
msrA
Peptide methionine sulfoxide reductase MsrA; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.492
KRG18465.1
Putative diguanylate cyclase.
    
  0.482
lpdA
Dihydrolipoyl dehydrogenase.
    
 0.474
tcrA
Transcriptional regulatory protein TcrA.
    
  0.466
KRG21297.1
Hypothetical protein.
    
  0.464
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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