STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG20863.1Hypothetical protein. (2028 aa)    
Predicted Functional Partners:
rssA_1
NTE family protein RssA.
  
     0.731
KRG21274.1
Undecaprenyl pyrophosphate phosphatase.
    
  0.711
KRG20878.1
Long-chain-fatty-acid--AMP ligase FadD29.
    
  0.627
aas
Bifunctional protein Aas.
    
  0.565
KRG21191.1
Hypothetical protein.
    
   0.561
KRG21197.1
AAA-like domain protein.
    
   0.561
KRG21199.1
Hypothetical protein.
    
   0.561
KRG20864.1
Rhomboid family protein.
 
     0.523
bepE_3
Efflux pump membrane transporter BepE.
       0.495
bepF_2
Efflux pump periplasmic linker BepF; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.495
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.