Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tam_2Trans-aconitate 2-methyltransferase. (220 aa)    
Predicted Functional Partners:
KRG20886.1
Ankyrin repeats (3 copies).
 
     0.830
KRG17326.1
Hypothetical protein.
  
     0.743
KRG17371.1
Hypothetical protein.
  
     0.742
KRG21438.1
Hypothetical protein.
  
     0.694
KRG22653.1
Serine/threonine protein kinase.
  
    0.597
KRG20885.1
Hypothetical protein.
       0.584
KRG21437.1
Hypothetical protein.
  
     0.578
KRG21292.1
Tubulin-tyrosine ligase family protein.
  
     0.569
KRG20533.1
Methyltransferase domain protein.
  
     0.564
mta
HTH-type transcriptional activator mta.
  
  
  0.564
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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