STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG20643.1Patatin-like phospholipase. (363 aa)    
Predicted Functional Partners:
bdhA_3
D-beta-hydroxybutyrate dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
  0.914
adc
Putative acetoacetate decarboxylase.
 
     0.778
KRG21274.1
Undecaprenyl pyrophosphate phosphatase.
    
  0.711
KRG20878.1
Long-chain-fatty-acid--AMP ligase FadD29.
    
  0.627
aas
Bifunctional protein Aas.
    
  0.565
KRG20645.1
HDOD domain protein.
       0.489
bdhA_2
D-beta-hydroxybutyrate dehydrogenase.
 
  
  0.471
phbC_2
Poly-beta-hydroxybutyrate polymerase.
  
     0.437
phbC_1
Poly-beta-hydroxybutyrate polymerase.
  
     0.436
KRG21191.1
Hypothetical protein.
    
   0.436
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.