STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hipA_1Serine/threonine-protein kinase HipA. (395 aa)    
Predicted Functional Partners:
KRG20659.1
Hypothetical protein.
 
 
 0.977
KRG20781.1
Hypothetical protein.
 
 
   0.886
hipB
Antitoxin HipB.
 
   0.881
KRG21877.1
Helix-turn-helix domain protein.
   
 
 0.837
KRG20780.1
Antitoxin HipB.
  
 
 0.662
KRG20739.1
Putative HTH-type transcriptional regulator.
   
   0.504
KRG21629.1
Fic/DOC family protein.
  
     0.468
KRG20259.1
Hypothetical protein.
   
   0.459
KRG17819.1
Hypothetical protein.
   
   0.459
ribC
Riboflavin synthase.
       0.440
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.