Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KRG20478.1Hypothetical protein. (226 aa)    
Predicted Functional Partners:
bamD
Outer membrane protein assembly factor BamD precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
   0.699
mip
Outer membrane protein MIP precursor.
    
 
 0.691
KRG20479.1
Hypothetical protein; TfoX N-terminal domain.
       0.678
KRG20480.1
Hypothetical protein.
 
     0.564
KRG20477.1
Hypothetical protein.
       0.523
bamA
Outer membrane protein assembly factor BamA precursor; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
    
   0.494
rssA_2
NTE family protein RssA.
    
   0.494
KRG22667.1
Hypothetical protein.
  
     0.459
lpdA
Dihydrolipoyl dehydrogenase.
     
  0.432
gcvT
Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine.
     
  0.431
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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