STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG20486.1Putative ABC transporter ATP-binding protein. (234 aa)    
Predicted Functional Partners:
KRG20485.1
FtsX-like permease family protein.
 
 0.986
macB
Macrolide export ATP-binding/permease protein MacB.
 0.915
KRG22440.1
Putative multidrug export ATP-binding/permease protein.
 
    
0.908
KRG20744.1
Putative multidrug export ATP-binding/permease protein.
 
    
0.908
lolE
Lipoprotein-releasing system transmembrane protein LolE.
  
 0.907
apxIB_3
Toxin RTX-I translocation ATP-binding protein.
 
    
0.906
KRG19408.1
Putative ABC transporter ATP-binding protein.
 
    
0.906
msbA
Lipid A export ATP-binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
     
0.900
mdtA_1
Multidrug resistance protein MdtA precursor; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
  0.886
KRG20868.1
Hypothetical protein.
   
 0.873
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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