Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KRG20522.1Protein kinase domain protein. (1022 aa)    
Predicted Functional Partners:
KRG21620.1
Primosome assembly protein PriA.
  
     0.772
KRG22667.1
Hypothetical protein.
  
     0.771
KRG21085.1
Ankyrin repeats (3 copies).
  
     0.770
KRG22514.1
Type III restriction enzyme, res subunit.
  
     0.766
KRG17643.1
Type III restriction enzyme, res subunit.
  
     0.765
KRG22621.1
RhoGAP domain protein.
  
     0.638
KRG21298.1
Histone methylation protein DOT1.
  
     0.632
tcaR
HTH-type transcriptional regulator TcaR.
  
     0.597
dprE1
Putative decaprenylphosphoryl-beta-D-ribose oxidase.
  
     0.571
KRG22719.1
RasGEF domain protein.
  
     0.566
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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