STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KRG20533.1Methyltransferase domain protein. (250 aa)    
Predicted Functional Partners:
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate.
    
  0.696
KRG21556.1
Putative acetyltransferase.
 
      0.680
KRG17371.1
Hypothetical protein.
  
     0.607
KRG17326.1
Hypothetical protein.
  
     0.570
tam_2
Trans-aconitate 2-methyltransferase.
  
     0.564
KRG22653.1
Serine/threonine protein kinase.
  
     0.524
KRG20532.1
Hypothetical protein.
       0.482
KRG17717.1
TDP-fucosamine acetyltransferase.
  
  
  0.439
KRG21776.1
Serine/threonine protein kinase.
  
     0.430
KRG22845.1
Acetyltransferase (GNAT) family protein.
  
     0.416
Your Current Organism:
Berkiella aquae
NCBI taxonomy Id: 295108
Other names: C. Berkiella aquae, Candidatus Berkiella aquae, Coxiellaceae bacterium HT99, Legionella-like amoebal pathogen HT99
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.